formod.c File Reference

JURASSIC forward model. More...

#include "jurassic.h"

Go to the source code of this file.

Functions
void	call_formod (ctl_t *ctl, const tbl_t *tbl, const char *wrkdir, const char *obsfile, const char *atmfile, const char *radfile, const char *task, const char *obsref)
	Perform forward model calculations in a single directory. More...
void	compute_rel_errors (const ctl_t *ctl, const obs_t *obs_test, const obs_t *obs_ref, double *mre, double *sdre, double *minre, double *maxre)
	Calculate relative errors. More...
void	usage (void)
	Print command-line help. More...
int	main (int argc, char *argv[])

Detailed Description

JURASSIC forward model.

Definition in file formod.c.

Function Documentation

call_formod()

void call_formod	(	ctl_t *	ctl,
		const tbl_t *	tbl,
		const char *	wrkdir,
		const char *	obsfile,
		const char *	atmfile,
		const char *	radfile,
		const char *	task,
		const char *	obsref
	)

Perform forward model calculations in a single directory.

Definition at line 226 of file formod.c.

                      {
 
  static atm_t atm, atm2;
  static obs_t obs, obs2;
 
  /* Read atmospheric data... */
  SELECT_TIMER("READ_ATM", "INPUT");
  read_atm(wrkdir, atmfile, ctl, &atm, 0);
 
  /* Read observation geometry... */
  SELECT_TIMER("READ_OBS", "INPUT");
  read_obs(wrkdir, obsfile, ctl, &obs, 0);
 
  /* Compute multiple profiles... */
  if (task[0] == 'p' || task[0] == 'P') {
 
    SELECT_TIMER("FORMOD_PROFILE_LOOP", "FORWARD");
 
    /* Loop over ray paths... */
    for (int ir = 0; ir < obs.nr; ir++) {
 
      /* Get atmospheric data... */
      atm2.np = 0;
      for (int ip = 0; ip < atm.np; ip++)
        if (atm.time[ip] == obs.time[ir]) {
          atm2.time[atm2.np] = atm.time[ip];
          atm2.z[atm2.np] = atm.z[ip];
          atm2.lon[atm2.np] = atm.lon[ip];
          atm2.lat[atm2.np] = atm.lat[ip];
          atm2.p[atm2.np] = atm.p[ip];
          atm2.t[atm2.np] = atm.t[ip];
          for (int ig = 0; ig < ctl->ng; ig++)
            atm2.q[ig][atm2.np] = atm.q[ig][ip];
          for (int iw = 0; iw < ctl->nw; iw++)
            atm2.k[iw][atm2.np] = atm.k[iw][ip];
          atm2.np++;
        }
 
      /* Get observation data... */
      obs2.nr = 1;
      obs2.time[0] = obs.time[ir];
      obs2.vpz[0] = obs.vpz[ir];
      obs2.vplon[0] = obs.vplon[ir];
      obs2.vplat[0] = obs.vplat[ir];
      obs2.obsz[0] = obs.obsz[ir];
      obs2.obslon[0] = obs.obslon[ir];
      obs2.obslat[0] = obs.obslat[ir];
 
      /* Check number of data points... */
      if (atm2.np > 0) {
 
        /* Call forward model... */
        formod(ctl, tbl, &atm2, &obs2);
 
        /* Save radiance data... */
        for (int id = 0; id < ctl->nd; id++) {
          obs.rad[id][ir] = obs2.rad[id][0];
          obs.tau[id][ir] = obs2.tau[id][0];
        }
      }
    }
 
    /* Write radiance data... */
    SELECT_TIMER("WRITE_OBS", "OUTPUT");
    write_obs(wrkdir, radfile, ctl, &obs, 0);
  }
 
  /* Compute single profile... */
  else {
 
    /* Call forward model... */
    SELECT_TIMER("FORMOD", "FORWARD");
    formod(ctl, tbl, &atm, &obs);
 
    /* Save radiance data... */
    SELECT_TIMER("WRITE_OBS", "OUTPUT");
    write_obs(wrkdir, radfile, ctl, &obs, 0);
 
    /* Evaluate results... */
    if (obsref[0] != '-') {
 
      SELECT_TIMER("EVAL", "OUTPUT");
 
      /* Read reference data... */
      read_obs(wrkdir, obsref, ctl, &obs2, 0);
 
      /* Calculate relative errors... */
      double mre[ND], sdre[ND], minre[ND], maxre[ND];
      compute_rel_errors(ctl, &obs, &obs2, mre, sdre, minre, maxre);
 
      /* Write results... */
      for (int id = 0; id < ctl->nd; id++)
        printf
          ("EVAL: nu= %.4f cm^-1 | MRE= %g %% | SDRE= %g %% | MinRE= %g %% | MaxRE= %g %%\n",
           ctl->nu[id], mre[id], sdre[id], minre[id], maxre[id]);
    }
 
    /* Compute contributions of emitters... */
    if (task[0] == 'c' || task[0] == 'C') {
 
      SELECT_TIMER("CONTRIBUTIONS", "FORWARD");
 
      char filename[LEN];
 
      /* Switch off continua... */
      ctl->ctm_co2 = 0;
      ctl->ctm_h2o = 0;
      ctl->ctm_n2 = 0;
      ctl->ctm_o2 = 0;
 
      /* Loop over emitters... */
      for (int ig = 0; ig < ctl->ng; ig++) {
 
        /* Copy atmospheric data... */
        copy_atm(ctl, &atm2, &atm, 0);
 
        /* Set extinction to zero... */
        for (int iw = 0; iw < ctl->nw; iw++)
          for (int ip = 0; ip < atm2.np; ip++)
            atm2.k[iw][ip] = 0;
 
        /* Select emitter... */
        for (int ig2 = 0; ig2 < ctl->ng; ig2++)
          if (ig2 != ig)
            for (int ip = 0; ip < atm2.np; ip++)
              atm2.q[ig2][ip] = 0;
 
        /* Call forward model... */
        formod(ctl, tbl, &atm2, &obs);
 
        /* Save radiance data... */
        sprintf(filename, "%s.%s", radfile, ctl->emitter[ig]);
        write_obs(wrkdir, filename, ctl, &obs, 0);
      }
 
      /* Copy atmospheric data... */
      copy_atm(ctl, &atm2, &atm, 0);
 
      /* Set volume mixing ratios to zero, keep extinction... */
      for (int ig = 0; ig < ctl->ng; ig++)
        for (int ip = 0; ip < atm2.np; ip++)
          atm2.q[ig][ip] = 0;
 
      /* Call forward model... */
      formod(ctl, tbl, &atm2, &obs);
 
      /* Save radiance data... */
      sprintf(filename, "%s.EXTINCT", radfile);
      write_obs(wrkdir, filename, ctl, &obs, 0);
    }
 
    /* Measure CPU-time... */
    if (task[0] == 't' || task[0] == 'T') {
 
      /* Init... */
      double t_min = 0, t_max = 0, t_mean = 0, t_sd = 0;
      int n = 0;
 
      /* Initialize random number generator... */
      gsl_rng_env_setup();
      gsl_rng *rng = gsl_rng_alloc(gsl_rng_default);
 
      /* Loop over profiles... */
      do {
 
        /* Create random atmosphere... */
        copy_atm(ctl, &atm2, &atm, 0);
        double dtemp = 40. * (gsl_rng_uniform(rng) - 0.5);
        double dpress = 1. - 0.1 * gsl_rng_uniform(rng);
        double dq[NG];
        for (int ig = 0; ig < ctl->ng; ig++)
          dq[ig] = 0.8 + 0.4 * gsl_rng_uniform(rng);
        for (int ip = 0; ip < atm2.np; ip++) {
          atm2.t[ip] += dtemp;
          atm2.p[ip] *= dpress;
          for (int ig = 0; ig < ctl->ng; ig++)
            atm2.q[ig][ip] *= dq[ig];
        }
 
        /* Measure runtime... */
        SELECT_TIMER("BENCHMARK_SAMPLE", "ANALYSIS");
        double t0 = omp_get_wtime();
        formod(ctl, tbl, &atm2, &obs);
        double dt = omp_get_wtime() - t0;
 
        /* Get runtime statistics... */
        t_mean += dt;
        t_sd += POW2(dt);
        if (n == 0 || dt < t_min)
          t_min = dt;
        if (n == 0 || dt > t_max)
          t_max = dt;
        n++;
 
      } while (t_mean < 10.0);
 
      /* Keep the legacy benchmark line and the new timer-style overlap metric. */
      t_mean /= (double) n;
      t_sd = sqrt(t_sd / (double) n - POW2(t_mean));
      printf("RUNTIME: mean= %g s | stddev= %g s | min= %g s | max= %g s\n",
             t_mean, t_sd, t_min, t_max);
 
      /* Free... */
      gsl_rng_free(rng);
    }
 
    /* Analyze impact of step size... */
    if (task[0] == 's' || task[0] == 'S') {
 
      SELECT_TIMER("STEP_ANALYSIS", "ANALYSIS");
 
      /* Reference run... */
      ctl->rayds = 0.1;
      ctl->raydz = 0.01;
      formod(ctl, tbl, &atm, &obs);
      copy_obs(ctl, &obs2, &obs, 0);
 
      /* Loop over step size... */
      for (double dz = 0.01; dz <= 2; dz *= 1.1)
        for (double ds = 0.1; ds <= 50; ds *= 1.1) {
 
          /* Set step size... */
          ctl->rayds = ds;
          ctl->raydz = dz;
 
          /* Measure runtime... */
          double t0 = omp_get_wtime();
          formod(ctl, tbl, &atm, &obs);
          double dt = omp_get_wtime() - t0;
 
          /* Calculate relative errors... */
          double mre[ND], sdre[ND], minre[ND], maxre[ND];
          compute_rel_errors(ctl, &obs, &obs2, mre, sdre, minre, maxre);
 
          /* Write results... */
          for (int id = 0; id < ctl->nd; id++)
            printf
              ("STEPSIZE: ds= %.4f km | dz= %g km | t= %g s | nu= %.4f cm^-1"
               " | MRE= %g %% | SDRE= %g %% | MinRE= %g %% | MaxRE= %g %%\n",
               ds, dz, dt, ctl->nu[id], mre[id], sdre[id], minre[id],
               maxre[id]);
        }
    }
  }
}

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compute_rel_errors()

void compute_rel_errors	(	const ctl_t *	ctl,
		const obs_t *	obs_test,
		const obs_t *	obs_ref,
		double *	mre,
		double *	sdre,
		double *	minre,
		double *	maxre
	)

Calculate relative errors.

Definition at line 482 of file formod.c.

                 {
 
  /* Loop over channels... */
  for (int id = 0; id < ctl->nd; id++) {
 
    double sum = 0, sum2 = 0;
    minre[id] = +1e9;
    maxre[id] = -1e9;
    int n = 0;
 
    /* Loop over ray paths... */
    for (int ir = 0; ir < obs_test->nr; ir++) {
 
      /* Check for zero... */
      if (obs_ref->rad[id][ir] == 0)
        continue;
 
      /* Calculate relative error... */
      double err = 100.0 * (obs_test->rad[id][ir] - obs_ref->rad[id][ir])
        / obs_ref->rad[id][ir];
 
      /* Get statistics... */
      sum += err;
      sum2 += err * err;
      if (err > maxre[id])
        maxre[id] = err;
      if (err < minre[id])
        minre[id] = err;
      n++;
    }
 
    /* Get mean and standard deviaton... */
    mre[id] = sum / n;
    sdre[id] = sqrt(sum2 / n - mre[id] * mre[id]);
  }
}

usage()

static void usage

(

void

)

Print command-line help.

Definition at line 163 of file formod.c.

        {
 
  printf("\nJURASSIC forward model.\n\n");
  printf
    ("Compute simulated radiances or transmittances for the configured\n");
  printf
    ("channels from observation geometry, atmospheric state, and control\n");
  printf("settings.\n\n");
  printf("Usage:\n");
  printf("  formod <ctl> <obs> <atm> <rad> [KEY VALUE ...]\n\n");
  printf("Arguments:\n");
  printf("  <ctl>  Control file.\n");
  printf("  <obs>  Observation geometry input file.\n");
  printf("  <atm>  Atmospheric state input file.\n");
  printf("  <rad>  Output file for simulated radiances or transmittances.\n");
  printf("  [KEY VALUE]  Optional control parameters.\n\n");
  printf("Tool-specific control parameters:\n");
  printf("  TASK <name>      Select the operation mode.\n");
  printf
    ("                   - or omitted: regular forward-model simulation.\n");
  printf
    ("                   c: write separate outputs for individual emitter and\n");
  printf("                      extinction contributions.\n");
  printf
    ("                   p: process observation profiles one ray at a time,\n");
  printf("                      matching atmospheric profiles by time.\n");
  printf
    ("                   s: analyze sensitivity to ray-tracing step sizes.\n");
  printf
    ("                   t: run the built-in runtime benchmark using randomly\n");
  printf
    ("                      perturbed versions of the input atmosphere.\n");
  printf
    ("  DIRLIST <file>   Read working directories from <file> and run one case\n");
  printf
    ("                   per directory using the same <obs>, <atm>, and <rad>\n");
  printf("                   filenames relative to each listed directory.\n");
  printf
    ("  OBSREF <file>    Read reference observations from <file> and print\n");
  printf
    ("                   relative-error diagnostics against the simulated output.\n");
  printf("\n");
  printf("Common control parameters:\n");
  printf
    ("  TBLBASE, TBLFMT               Lookup-table base name and format.\n");
  printf
    ("  ATMFMT, OBSFMT                Atmospheric and observation file formats.\n");
  printf("  NG, EMITTER[i]                Active emitters.\n");
  printf("  ND, NU[i], NW, WINDOW[i]      Spectral channels and windows.\n");
  printf
    ("  NCL, CLNU[i], NSF, SFNU[i]    Cloud and surface spectral grids.\n");
  printf
    ("  WRITE_BBT, FORMOD             Output units and forward-model selection.\n");
  printf("  CTM_*, REFRAC                 Continua and refractivity.\n");
  printf
    ("  RAYDS, RAYDZ, FOV             Ray tracing and field of view.\n\n");
  printf("Further information:\n");
  printf("  Manual: https://slcs-jsc.github.io/jurassic/\n");
}

main()

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 63 of file formod.c.

                {
 
  static ctl_t ctl;
 
  /* Print usage information... */
  USAGE;
 
  /* Check arguments... */
  if (argc < 5)
    ERRMSG("Missing or invalid command-line arguments.\n\n"
           "Usage: formod <ctl> <obs> <atm> <rad> [KEY VALUE ...]\n\n"
           "Use -h for full help.");
 
  /* Read control parameters... */
  SELECT_TIMER("READ_CTL", "INPUT");
  read_ctl(argc, argv, &ctl);
 
#ifdef UNIFIED
 
  static atm_t atm;
  static obs_t obs;
 
  /* Read observation geometry... */
  SELECT_TIMER("READ_OBS", "INPUT");
  read_obs(NULL, argv[2], &ctl, &obs, 0);
 
  /* Read atmospheric data... */
  SELECT_TIMER("READ_ATM", "INPUT");
  read_atm(NULL, argv[3], &ctl, &atm, 0);
 
  /* Call forward model... */
  SELECT_TIMER("FORMOD_UNIFIED", "FORWARD");
  jur_unified_init(argc, argv);
  jur_unified_formod_multiple_packages(&atm, &obs, 1, NULL);
 
  /* Save radiance data... */
  SELECT_TIMER("WRITE_OBS", "OUTPUT");
  write_obs(NULL, argv[4], &ctl, &obs, 0);
 
#else
 
  char dirlist[LEN], obsref[LEN], task[LEN];
 
  /* Initialize look-up tables... */
  SELECT_TIMER("READ_TBL", "INPUT");
  tbl_t *tbl = read_tbl(&ctl);
 
  /* Get task... */
  SELECT_TIMER("READ_TASK", "INPUT");
  scan_ctl(argc, argv, "TASK", -1, "-", task);
 
  /* Get dirlist... */
  SELECT_TIMER("READ_DIRLIST", "INPUT");
  scan_ctl(argc, argv, "DIRLIST", -1, "-", dirlist);
 
  /* Get reference data... */
  SELECT_TIMER("READ_OBSREF", "INPUT");
  scan_ctl(argc, argv, "OBSREF", -1, "-", obsref);
 
  /* Single forward calculation... */
  if (dirlist[0] == '-')
    call_formod(&ctl, tbl, NULL, argv[2], argv[3], argv[4], task, obsref);
 
  /* Work on directory list... */
  else {
 
    /* Open directory list... */
    FILE *in;
    if (!(in = fopen(dirlist, "r")))
      ERRMSG("Cannot open directory list!");
 
    /* Loop over directories... */
    char wrkdir[LEN];
    while (fscanf(in, "%4999s", wrkdir) != EOF) {
 
      /* Write info... */
      LOG(1, "\nWorking directory: %s", wrkdir);
 
      /* Call forward model... */
      call_formod(&ctl, tbl, wrkdir, argv[2], argv[3], argv[4], task, obsref);
    }
 
    /* Close dirlist... */
    fclose(in);
  }
 
#endif
 
  /* Free... */
  SELECT_TIMER("FINALIZE", "OVERHEAD");
  tbl_free(&ctl, tbl);
  PRINT_TIMERS;
 
  return EXIT_SUCCESS;
}

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